Stem-loop bta-mir-885

Accession

MI0009904

Description

Bos taurus bta-mir-885 precursor miRNA

Literature search

17 open access papers mention bta-mir-885
(47 sentences)

Sequence

58883 reads, 57.0 reads per million, 301 experiments

ccgcgcucucUCCAUUACACUACCCUGCCUCUUcuccacgagAGGCAGCGGGGUGUAGUGGAUAgagcacgggu
(((.(((((.(((((((((((.(((((((((((......))))))))).))))))))))))).))))).)))..

Structure

--   c     c           A  -         cu 
  ccg gcucu UCCAUUACACU CC CUGCCUCUU  c
  ||| ||||| ||||||||||| || |||||||||   
  ggc cgagA AGGUGAUGUGG GG GACGGAgag  c
ug   a     U           -  C         ca 

Annotation confidence High

Genome context

22: 54438290-54438363 [-]

Mature bta-miR-885-5p

• Accession: MIMAT0009382
• Description: Bos taurus bta-miR-885-5p mature miRNA
• Sequence: 11 - UCCAUUACACUACCCUGCCUCUU - 33
• Evidence: experimental ; cloned [3]

Mature bta-miR-885-3p

• Accession: MIMAT0050892
• Description: Bos taurus bta-miR-885-3p mature miRNA
• Sequence: 43 - AGGCAGCGGGGUGUAGUGGAUA - 64
• Evidence: experimental ; cloned [3]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


3. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125