Stem-loop bta-mir-124a-2

Accession

MI0009725

Description

Bos taurus bta-mir-124a-2 precursor miRNA

Literature search

9 open access papers mention bta-mir-124a-2
(12 sentences)

Sequence

136985 reads, 512.0 reads per million, 209 experiments

aucaagaucagacucugcccucCGUGUUCACAGCGGACCUUGAUUuaaugucauacaauUAAGGCACGCGGUGAAUGCCAAGagcggagccuacaggcggcugcacuugaa
.(((((..(((..(((((.((..((((((((.(((..((((((((...........))))))))..))).))))))))..)).)))))(((....)))..)))..))))).

Structure

a     au   ----------ac     c  cC        A   GA        uaau 
 ucaag  cag            ucugc cu  GUGUUCAC GCG  CCUUGAUU    g
 |||||  |||            ||||| ||  |||||||| |||  ||||||||    u
 aguuc  guc            aggcg GA  CGUAAGUG CGC  GGAAUuaa    c
a     ac   ggcggacauccg     a  AC        G   AC        caua 

Annotation confidence High

Comments

This sequence was mis-named bta-mir-104-2 in [1].

Genome context

14: 29124356-29124466 [+]

Mature bta-miR-124a-5p

• Accession: MIMAT0050789
• Description: Bos taurus bta-miR-124a-5p mature miRNA
• Sequence: 23 - CGUGUUCACAGCGGACCUUGAUU - 45
• Evidence: experimental ; cloned [2,4], Array [3], qRT-PCR [3]

Mature bta-miR-124a-3p

• Accession: MIMAT0003811
• Description: Bos taurus bta-miR-124a-3p mature miRNA
• Sequence: 60 - UAAGGCACGCGGUGAAUGCCAAG - 82
• Evidence: experimental ; cloned [2,4], Array [3], qRT-PCR [3]

References

1. PubMed ID: 17105755
   Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
   "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
   "Physiol Genomics (2007) 29:35-43


2. PubMed ID: 19170227
   Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach
   "Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M"
   "Mol Reprod Dev (2009) 76:665-677


3. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


4. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125