Stem-loop bta-mir-410

Accession

MI0009825

Description

Bos taurus bta-mir-410 precursor miRNA

Literature search

24 open access papers mention bta-mir-410
(216 sentences)

Sequence

198672 reads, 266.0 reads per million, 307 experiments

ggguacuugaggagAGGUUGUCUGUGAUGAGUUCGcuuuauuaaugacgAAUAUAACACAGAUGGCCUGUUuucaguacca
.((((((.(((((.((((((((((((.((.((((((.........).))))).)).)))))))))))).))))))))))).

Structure

g      u     g            A  A     - uuu 
 gguacu gagga AGGUUGUCUGUG UG GUUCG c   a
 |||||| ||||| |||||||||||| || ||||| |   u
 ccauga cuuUU UCCGGUAGACAC AU UAAgc g   u
a      -     G            A  A     a uaa 

Annotation confidence High

Genome context

21: 65954512-65954592 [+]

Clustered miRNAs

14 other miRNAs are < 10 kb from bta-mir-410

Mature bta-miR-410-5p

• Accession: MIMAT0050861
• Description: Bos taurus bta-miR-410-5p mature miRNA
• Sequence: 15 - AGGUUGUCUGUGAUGAGUUCG - 35
• Evidence: experimental ; Array [3], qRT-PCR [3]

Mature bta-miR-410-3p

• Accession: MIMAT0009311
• Description: Bos taurus bta-miR-410-3p mature miRNA
• Sequence: 50 - AAUAUAACACAGAUGGCCUGUU - 71
• Evidence: experimental ; Array [3], qRT-PCR [3]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19170227
   Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach
   "Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M"
   "Mol Reprod Dev (2009) 76:665-677


3. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125