Stem-loop bta-mir-208a

Accession

MI0009773

Description

Bos taurus bta-mir-208a precursor miRNA

Literature search

24 open access papers mention bta-mir-208a
(69 sentences)

Sequence

989 reads, 34.0 reads per million, 77 experiments

ugacgggcGAGCUUUUGGCCCGGGUUAUACcugaugcucacguAUAAGACGAGCAAAAAGCUUGUugguca
((((.(((((((((((.((.((..((((((.(((...))).))))))..)).)).))))))))))).))))

Structure

    g           G  C  GG      c   u 
ugac ggcGAGCUUUU GC CG  UUAUAC uga  
|||| ||||||||||| || ||  |||||| ||| g
acug uUGUUCGAAAA CG GC  AAUAug acu  
    g           A  A  AG      c   c 

Annotation confidence High

Genome context

10: 21534418-21534488 [+]

Mature bta-miR-208a-5p

• Accession: MIMAT0050831
• Description: Bos taurus bta-miR-208a-5p mature miRNA
• Sequence: 9 - GAGCUUUUGGCCCGGGUUAUAC - 30
• Evidence: not_experimental

Mature bta-miR-208a-3p

• Accession: MIMAT0009261
• Description: Bos taurus bta-miR-208a-3p mature miRNA
• Sequence: 44 - AUAAGACGAGCAAAAAGCUUGU - 65
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125