Stem-loop bta-mir-301b

Accession

MI0009790

Description

Bos taurus bta-mir-301b precursor miRNA

Literature search

13 open access papers mention bta-mir-301b
(52 sentences)

Sequence

9553 reads, 10.0 reads per million, 283 experiments

uccugcuggccgcagguGCUCUGACGAGGUUGCACUACUgugcuuugaggagCAGUGCAAUGAUAUUGUCAAAGCAUccgggaccagccuuggag
(((.(((((((.(.((((((.((((((.((((((((.....((((....))))))))))))....)))))).)))))).))).)))))...))).

Structure

-   --u     -  g a      C      ---G        ACUgu    u 
 ucc   gcugg cc c gguGCU UGACGA    GUUGCACU     gcuu g
 |||   ||||| || | |||||| ||||||    ||||||||     ||||  
 agg   cgacc gg g cUACGA ACUGUU    UAACGUGA     Cgag a
g   uuc     a  - c      A      AUAG        -----    g 

Annotation confidence High

Genome context

17: 72109203-72109297 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-301b

Mature bta-miR-301b-5p

• Accession: MIMAT0050842
• Description: Bos taurus bta-miR-301b-5p mature miRNA
• Sequence: 18 - GCUCUGACGAGGUUGCACUACU - 39
• Evidence: not_experimental

Mature bta-miR-301b-3p

• Accession: MIMAT0009277
• Description: Bos taurus bta-miR-301b-3p mature miRNA
• Sequence: 53 - CAGUGCAAUGAUAUUGUCAAAGCAU - 77
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125