Stem-loop bta-mir-188

Accession

MI0009760

Description

Bos taurus bta-mir-188 precursor miRNA

Literature search

28 open access papers mention bta-mir-188
(92 sentences)

Sequence

14556 reads, 8.0 reads per million, 304 experiments

ugcucccucucucaCAUCCCUUGCAUGGUGGAGGGUgagcuuucugaaaacccCUCCCACAUGCAGGGUUUGCAggauggugagcc
.((((((..(((..((..(((((((((..((((((....(.....).....))))))..)))))))))..))..))).)).)))).

Structure

u    -  uc   ca  UC         GU      -Ugag u 
 gcuc cc  ucu  CA  CCUUGCAUG  GGAGGG     c u
 |||| ||  |||  ||  |||||||||  ||||||     | u
 cgag gg  agg  GU  GGGACGUAC  CCUCcc     g c
c    u  -u   AC  UU         AC      caaaa u 

Annotation confidence High

Genome context

X: 87725056-87725141 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from bta-mir-188

Mature bta-miR-188-5p

• Accession: MIMAT0009249
• Description: Bos taurus bta-miR-188-5p mature miRNA
• Sequence: 15 - CAUCCCUUGCAUGGUGGAGGGU - 36
• Evidence: experimental ; Array [3], qRT-PCR [3]

Mature bta-miR-188-3p

• Accession: MIMAT0060994
• Description: Bos taurus bta-miR-188-3p mature miRNA
• Sequence: 54 - CUCCCACAUGCAGGGUUUGCA - 74
• Evidence: experimental ; Array [3], qRT-PCR [3]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19170227
   Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach
   "Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M"
   "Mol Reprod Dev (2009) 76:665-677


3. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125