Stem-loop bta-mir-196a-1

Accession

MI0009767

Description

Bos taurus bta-mir-196a-1 precursor miRNA

Gene family

MIPF0000031; mir-196

Literature search

21 open access papers mention bta-mir-196a-1
(108 sentences)

Sequence

3392 reads, 118 reads per million, 40 experiments

ugaacuggaacugcugagugaauUAGGUAGUUUCAUGUUGUUGGGccuggauuucugaacacaacgacauuaaaccacccgacucacggcaguuacugcucc
......(((((((((..((((.((.(((.((((.((((((((((..(.........)..).))))))))).)))).))).)).))))))))))).)).....

Structure

ugaacu  -       ga    a  A   A    C         - Gc ugg 
      gg aacugcu  guga uU GGU GUUU AUGUUGUUG G  c   a
      || |||||||  |||| || ||| |||| ||||||||| |  |   u
      uc uugacgg  cacu ag cca caaa uacagcaac c  g   u
-ccucg  a       --    c  c   c    u         a aa ucu 

Annotation confidence High

Genome context

chr19: 38661613-38661714 [+]

Mature bta-miR-196a

• Accession: MIMAT0009255
• Description: Bos taurus bta-miR-196a mature miRNA
• Sequence: 24 - UAGGUAGUUUCAUGUUGUUGGG - 45
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125