Stem-loop bta-mir-182

Accession

MI0009755

Description

Bos taurus bta-mir-182 precursor miRNA mir-182

Gene
family

RF00702; mir-182

Literature search

142 open access papers mention bta-mir-182
(671 sentences)

Sequence

1987918 reads, 881.0 reads per million, 316 experiments

cgccgccgccugccucccaccauuUUUGGCAAUGGUAGAACUCACACUggugagguaaugggauccggUGGUUCUAGACUUGCCAACUAuggugcgagggcuuggccagca
.((.((((....((((.((((((..(((((((...((((((...((((((..............))))))))))))...)))))))..)))))).))))...))))..)).

Structure

c  -c    ccug    c      uU       UGG      UCA      ugaggu 
 gc  gccg    ccuc caccau  UUGGCAA   UAGAAC   CACUgg      a
 ||  ||||    |||| ||||||  |||||||   ||||||   ||||||       
 cg  cggu    ggag gugguA  AACCGUU   AUCUUG   GUggcc      a
a  ac    -ucg    c      UC       CAG      ---      uagggu 

Annotation confidence High

Genome context

4: 93591424-93591534 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from bta-mir-182

Mature bta-miR-182-5p

• Accession: MIMAT0009244
• Description: Bos taurus bta-miR-182-5p mature miRNA
• Sequence: 25 - UUUGGCAAUGGUAGAACUCACACU - 48
• Evidence: experimental ; Array [3], qRT-PCR [3]

Mature bta-miR-182-3p

• Accession: MIMAT0050825
• Description: Bos taurus bta-miR-182-3p mature miRNA
• Sequence: 69 - UGGUUCUAGACUUGCCAACUA - 89
• Evidence: experimental ; Array [3], qRT-PCR [3]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19170227
   Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach
   "Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M"
   "Mol Reprod Dev (2009) 76:665-677


3. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125