Stem-loop bta-mir-1839

Accession

MI0010473

Description

Bos taurus bta-mir-1839 precursor miRNA

Literature search

4 open access papers mention bta-mir-1839
(7 sentences)

Sequence

929898 reads, 272.0 reads per million, 319 experiments

aaugaaAAGGUAGAUAGAACAGGUCUUGUUugcaaaaugaauucaUGACCUACAUAUCUACCAACAGcaaug
........((((((((....(((((.((....((...))....)).)))))...))))))))..........

Structure

--aaugaaAA        GAAC     U  UUug  a 
          GGUAGAUA    AGGUC UG    ca  
          ||||||||    ||||| ||    || a
          CCAUCUAU    UCCAG ac    gu  
guaacGACAA        -ACA     U  uuaa  a 

Annotation confidence High

Genome context

14: 691785-691856 [-]

Mature bta-miR-1839-5p

• Accession: MIMAT0009968
• Description: Bos taurus bta-miR-1839-5p mature miRNA
• Sequence: 7 - AAGGUAGAUAGAACAGGUCUUGUU - 30
• Evidence: experimental ; Illumina [2]

Mature bta-miR-1839-3p

• Accession: MIMAT0050904
• Description: Bos taurus bta-miR-1839-3p mature miRNA
• Sequence: 46 - UGACCUACAUAUCUACCAACAG - 67
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125


2. PubMed ID: 21912509
   Solexa sequencing of novel and differentially expressed microRNAs in testicular and ovarian tissues in Holstein cattle
   "Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao Y, Hou M, Zhong J"
   "Int J Biol Sci (2011) 7:1016-1026