Stem-loop bta-mir-141

Accession

MI0009742

Description

Bos taurus bta-mir-141 precursor miRNA

Literature search

155 open access papers mention bta-mir-141
(831 sentences)

Sequence

4342471 reads, 3474.0 reads per million, 316 experiments

gaccggcucugggucCAUCUUCCAGCACAGUGUUGGAuggucuaauggugaagcuccUAACACUGUCUGGUAAAGAUGGcccccggcugg
..((((((..(((.(((((((((((.(((((((((((...((.......))...))).))))))))))))..))))))))))..))))))

Structure

ga      cu   u       --    C        -   ugg  ua 
  ccggcu  ggg cCAUCUU  CCAG ACAGUGUU GGA   uc  a
  ||||||  ||| |||||||  |||| |||||||| |||   ||  u
  ggucgg  ccc GGUAGAA  GGUC UGUCACAA ccu   ag  g
--      cc   -       AU    -        U   cga  ug 

Annotation confidence High

Genome context

5: 103498826-103498915 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-141

Mature bta-miR-141-5p

• Accession: MIMAT0060985
• Description: Bos taurus bta-miR-141-5p mature miRNA
• Sequence: 16 - CAUCUUCCAGCACAGUGUUGGA - 37
• Evidence: not_experimental

Mature bta-miR-141-3p

• Accession: MIMAT0009232
• Description: Bos taurus bta-miR-141-3p mature miRNA
• Sequence: 58 - UAACACUGUCUGGUAAAGAUGG - 79
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125