Stem-loop bta-mir-141

Accession

MI0009742

Description

Bos taurus bta-mir-141 precursor miRNA

Gene family

MIPF0000019; mir-8

Literature search

15 open access papers mention bta-mir-141
(37 sentences)

Sequence

232302 reads, 5793 reads per million, 78 experiments

gaccggcucuggguccaucuuccagcacaguguuggauggucuaauggugaagcuccUAACACUGUCUGGUAAAGAUGGcccccggcugg
..((((((..(((.(((((((((((.(((((((((((...((.......))...))).))))))))))))..))))))))))..))))))

Structure

ga      cu   u       --    c        -   ugg  ua 
  ccggcu  ggg ccaucuu  ccag acaguguu gga   uc  a
  ||||||  ||| |||||||  |||| |||||||| |||   ||  u
  ggucgg  ccc GGUAGAA  GGUC UGUCACAA ccu   ag  g
--      cc   -       AU    -        U   cga  ug 

Annotation confidence High

Genome context

chr5: 104149742-104149831 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-141

Mature bta-miR-141

• Accession: MIMAT0009232
• Description: Bos taurus bta-miR-141 mature miRNA
• Sequence: 58 - UAACACUGUCUGGUAAAGAUGG - 79
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125