Stem-loop bta-mir-302a

Accession

MI0009791

Description

Bos taurus bta-mir-302a precursor miRNA

Literature search

24 open access papers mention bta-mir-302a
(54 sentences)

Sequence

4563 reads, 5.0 reads per million, 110 experiments

cccaccacuUAAACGUGGAUGUACUUGCUUUauagcuaaaaaagUAAGUGCUUCCAUGUUUUAGUgaugg
.(((.((((.(((((((((.(((((((((((.........))))))))))).))))))))).)))).)))

Structure

c   c    U         U           aua 
 cca cacu AAACGUGGA GUACUUGCUUU   g
 ||| |||| ||||||||| |||||||||||   c
 ggu gUGA UUUGUACCU CGUGAAUgaaa   u
-   a    U         U           aaa 

Annotation confidence High

Genome context

6: 12980768-12980837 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from bta-mir-302a

Mature bta-miR-302a-5p

• Accession: MIMAT0050843
• Description: Bos taurus bta-miR-302a-5p mature miRNA
• Sequence: 10 - UAAACGUGGAUGUACUUGCUUU - 31
• Evidence: not_experimental

Mature bta-miR-302a-3p

• Accession: MIMAT0009278
• Description: Bos taurus bta-miR-302a-3p mature miRNA
• Sequence: 45 - UAAGUGCUUCCAUGUUUUAGU - 65
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125