Stem-loop bta-mir-296

Accession

MI0009786

Description

Bos taurus bta-mir-296 precursor miRNA

Literature search

7 open access papers mention bta-mir-296
(8 sentences)

Sequence

3742 reads, 62 reads per million, 66 experiments

aggacccuuccgGAGGGCCCCCCCCAAUCCUguugugcuugguucaGAGGGUUGGGCGGAGGCUUUCCugaagggucu
.(((((((((.((((((((.(((((((((((.(((.((...)).)))))))))))).)).)))))))).)))))))))

Structure

a         c        C  -         g   u  u 
 ggacccuuc gGAGGGCC CC CCCAAUCCU uug gc  
 ||||||||| |||||||| || ||||||||| ||| || u
 ucugggaag CCUUUCGG GG GGGUUGGGA Gac ug  
-         u        A  C         -   u  g 

Annotation confidence High

Genome context

chr13: 58333114-58333191 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-296

Mature bta-miR-296-3p

• Accession: MIMAT0009273
• Description: Bos taurus bta-miR-296-3p mature miRNA
• Sequence: 47 - GAGGGUUGGGCGGAGGCUUUCC - 68
• Evidence: experimental ; Illumina [2]

Mature bta-miR-296-5p

• Accession: MIMAT0026918
• Description: Bos taurus bta-miR-296-5p mature miRNA
• Sequence: 13 - GAGGGCCCCCCCCAAUCCU - 31
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125


2. PubMed ID: 23100578
   Profiling of differentially expressed microRNA and the bioinformatic target gene analyses in bovine fast- and slow-type muscles by massively parallel sequencing
   "Muroya S, Taniguchi M, Shibata M, Oe M, Ojima K, Nakajima I, Chikuni K"
   "J Anim Sci (2013) 91:90-103