Stem-loop bta-mir-296

Accession

MI0009786

Description

Bos taurus bta-mir-296 precursor miRNA

Literature search

59 open access papers mention bta-mir-296
(220 sentences)

Sequence

144260 reads, 127.0 reads per million, 319 experiments

aggacccuuccgGAGGGCCCCCCCCAAUCCUGUugugcuugguucagAGGGUUGGGCGGAGGCUUUCCUgaagggucu
.(((((((((.((((((((.(((((((((((.(((.((...)).)))))))))))).)).)))))))).)))))))))

Structure

a         c        C  -         G   u  u 
 ggacccuuc gGAGGGCC CC CCCAAUCCU Uug gc  
 ||||||||| |||||||| || ||||||||| ||| || u
 ucugggaag CCUUUCGG GG GGGUUGGGA gac ug  
-         U        A  C         -   u  g 

Annotation confidence High

Genome context

13: 57550926-57551003 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-296

Mature bta-miR-296-5p

• Accession: MIMAT0026918
• Description: Bos taurus bta-miR-296-5p mature miRNA
• Sequence: 13 - GAGGGCCCCCCCCAAUCCUGU - 33
• Evidence: experimental ; Illumina [2]

Mature bta-miR-296-3p

• Accession: MIMAT0009273
• Description: Bos taurus bta-miR-296-3p mature miRNA
• Sequence: 48 - AGGGUUGGGCGGAGGCUUUCCU - 69
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125


2. PubMed ID: 23100578
   Profiling of differentially expressed microRNA and the bioinformatic target gene analyses in bovine fast- and slow-type muscles by massively parallel sequencing
   "Muroya S, Taniguchi M, Shibata M, Oe M, Ojima K, Nakajima I, Chikuni K"
   "J Anim Sci (2013) 91:90-103