Stem-loop bta-mir-449a

Accession

MI0009834

Description

Bos taurus bta-mir-449a precursor miRNA mir-449

Gene
family

RF00711; mir-449

Literature search

51 open access papers mention bta-mir-449a
(194 sentences)

Sequence

12598 reads, 7.0 reads per million, 279 experiments

ugugugauggguUGGCAGUGUAUUGUUAGCUGGUugaauaugugagugccaUCAGCUAACAUGCAACUGCUAUcuuauugcauguaua
.((((((((((.(((((((((((.((((((((((.(.((......)).).)))))))))))))).))))))).)))))))))).....

Structure

----u          u       -    U          u a  au 
     gugugauggg UGGCAGU GUAU GUUAGCUGGU g au  g
     |||||||||| ||||||| |||| |||||||||| | ||   
     uacguuauuc AUCGUCA CGUA CAAUCGACUa c ug  u
auaug          U       A    -          c g  ag 

Annotation confidence High

Genome context

20: 23943316-23943403 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from bta-mir-449a

Mature bta-miR-449a-5p

• Accession: MIMAT0009320
• Description: Bos taurus bta-miR-449a-5p mature miRNA
• Sequence: 13 - UGGCAGUGUAUUGUUAGCUGGU - 34
• Evidence: not_experimental

Mature bta-miR-449a-3p

• Accession: MIMAT0050866
• Description: Bos taurus bta-miR-449a-3p mature miRNA
• Sequence: 52 - UCAGCUAACAUGCAACUGCUAU - 73
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125