Stem-loop bta-mir-371

Accession

MI0009815

Description

Bos taurus bta-mir-371 precursor miRNA

Literature search

17 open access papers mention bta-mir-371
(39 sentences)

Sequence

317 reads, 1.0 reads per million, 73 experiments

cagccugugguACUCAAACUGUGGGGGCACUUCcguuuuacgaagggAAGUGCCGCCAUGUUUUGAGUGuuaccgguug
(((((.((((((((((((.(((((.(((((((((.(((...))).))))))))).))))).)))))))))))).)))))

Structure

     u            C     G         g   u 
cagcc gugguACUCAAA UGUGG GGCACUUCc uuu  
||||| |||||||||||| ||||| ||||||||| ||| a
guugg cauuGUGAGUUU GUACC CCGUGAAgg aag  
     c            U     G         g   c 

Annotation confidence High

Genome context

18: 60903171-60903249 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-371

Mature bta-miR-371-5p

• Accession: MIMAT0050858
• Description: Bos taurus bta-miR-371-5p mature miRNA
• Sequence: 12 - ACUCAAACUGUGGGGGCACUUC - 33
• Evidence: experimental ; Array [3], qRT-PCR [3]

Mature bta-miR-371-3p

• Accession: MIMAT0009301
• Description: Bos taurus bta-miR-371-3p mature miRNA
• Sequence: 48 - AAGUGCCGCCAUGUUUUGAGUG - 69
• Evidence: experimental ; Array [3], qRT-PCR [3]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19170227
   Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach
   "Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M"
   "Mol Reprod Dev (2009) 76:665-677


3. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125