Stem-loop bta-mir-490

Accession

MI0009845

Description

Bos taurus bta-mir-490 precursor miRNA

Literature search

19 open access papers mention bta-mir-490
(197 sentences)

Sequence

23558 reads, 41.0 reads per million, 291 experiments

uggagacuugcugguuuggaaaguucauuguucgacaCCAUGGAUCUCCAGGUGGGUcacguuuagagauacacCAACCUGGAGGACUCCAUGCUGUugagcuguucacaagcagcggacacuucua
.((((..((((((.(((((((........((((((((.(((((((((((((((.(((...((........))))).)))))))))..)))))).))))))))..))).))))))))))...))))..

Structure

-u    -ac      g    -   aguucauu        C      --         G   cac  uua 
  ggag   uugcug uuug gaa        guucgaca CAUGGA  UCUCCAGGU GGU   gu   g
  ||||   |||||| |||| |||        |||||||| ||||||  ||||||||| |||   ||    
  cuuc   ggcgac gaac cuu        cgaguUGU GUACCU  GGAGGUCCA Cca   ca   a
au    aca      -    a   ------gu        C      CA         A   ---  uag 

Annotation confidence High

Genome context

4: 100636672-100636798 [+]

Mature bta-miR-490-5p

• Accession: MIMAT0061020
• Description: Bos taurus bta-miR-490-5p mature miRNA
• Sequence: 38 - CCAUGGAUCUCCAGGUGGGU - 57
• Evidence: not_experimental

Mature bta-miR-490-3p

• Accession: MIMAT0009331
• Description: Bos taurus bta-miR-490-3p mature miRNA
• Sequence: 75 - CAACCUGGAGGACUCCAUGCUGU - 97
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125