Stem-loop bta-mir-33b

Accession

MI0009808

Description

Bos taurus bta-mir-33b precursor miRNA

Literature search

29 open access papers mention bta-mir-33b
(66 sentences)

Sequence

21491 reads, 23.0 reads per million, 303 experiments

gcgggcggccccgcgGUGCAUUGCUGUUGCAUUGCAugugugaggcaggugCAGUGCCUCGGCAGUGCAGCCcggagccggccccuggcaccgc
((((.((((.(((.((((((((((((..(((((((((.(((...))).)))))))))..)))))))))).))))).))))(((...))).))))

Structure

    ---------g    c   c  -          UU         g   g 
gcgg          cggc ccg gG UGCAUUGCUG  GCAUUGCAu ugu  
||||          |||| ||| || ||||||||||  ||||||||| ||| a
cgcc          gccg ggc CC ACGUGACGGC  CGUGACgug acg  
    acgguccccg    a   -  G          UC         g   g 

Annotation confidence High

Genome context

19: 34647548-34647641 [+]

Mature bta-miR-33b-5p

• Accession: MIMAT0009295
• Description: Bos taurus bta-miR-33b-5p mature miRNA
• Sequence: 16 - GUGCAUUGCUGUUGCAUUGCA - 36
• Evidence: not_experimental

Mature bta-miR-33b-3p

• Accession: MIMAT0050855
• Description: Bos taurus bta-miR-33b-3p mature miRNA
• Sequence: 52 - CAGUGCCUCGGCAGUGCAGCC - 72
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125