Stem-loop bta-mir-502a-1

Accession

MI0009852

Description

Bos taurus bta-mir-502a-1 precursor miRNA

Literature search

2 open access papers mention bta-mir-502a-1
(3 sentences)

Sequence

86719 reads, 81.0 reads per million, 321 experiments

ugcccaccccucUAAUCCUUGCUCUCUGGGUGCUagugcugucuccaugcAAUGCACCUGGGCAAGGAUUCAgagagggugggcu
.(((((((((((((((((((((((...((((((...(((((....)).)))..))))))))))))))))).)))).)))))))).

Structure

u        -    -           UCU      Uag   -  u 
 gcccaccc cucU AAUCCUUGCUC   GGGUGC   ugc ug c
 |||||||| |||| |||||||||||   ||||||   ||| ||  
 cggguggg gagA UUAGGAACGGG   UCCACG   Acg ac u
u        a    C           ---      -UA   u  c 

Annotation confidence High

Genome context

X: 87742024-87742108 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from bta-mir-502a-1

Mature bta-miR-502a-1-5p

• Accession: MIMAT0050874
• Description: Bos taurus bta-miR-502a-1-5p mature miRNA
• Sequence: 13 - UAAUCCUUGCUCUCUGGGUGCU - 34
• Evidence: not_experimental

Mature bta-miR-502a-3p

• Accession: MIMAT0009338
• Description: Bos taurus bta-miR-502a-3p mature miRNA
• Sequence: 51 - AAUGCACCUGGGCAAGGAUUCA - 72
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125