Stem-loop bta-mir-199a-2

Accession

MI0009770

Description

Bos taurus bta-mir-199a-2 precursor miRNA mir-199

Gene
family

RF00144; mir-199

Literature search

24 open access papers mention bta-mir-199a-2
(81 sentences)

Sequence

309187 reads, 3202 reads per million, 67 experiments

gccaaCCCAGUGUUCAGACUACCUGUUcagggggcucugaauguguACAGUAGUCUGCACAUUGGUUAggc
(((...(((((((.((((((((.((((((((....)))))......))))))))))).)))))))...)))

Structure

   aaC       U        C   ------     g 
gcc   CCAGUGU CAGACUAC UGU      Ucagg g
|||   ||||||| |||||||| |||      |||||  
cgg   GGUUACA GUCUGAUG ACA      agucu g
   AUU       C        -   ugugua     c 

Annotation confidence High

Genome context

chr7: 16580964-16581034 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-199a-2

Mature bta-miR-199a-5p

• Accession: MIMAT0003544
• Description: Bos taurus bta-miR-199a-5p mature miRNA
• Sequence: 6 - CCCAGUGUUCAGACUACCUGUU - 27
• Evidence: experimental ; cloned [1-2]

Mature bta-miR-199a-3p

• Accession: MIMAT0003746
• Description: Bos taurus bta-miR-199a-3p mature miRNA
• Sequence: 47 - ACAGUAGUCUGCACAUUGGUUA - 68
• Evidence: experimental ; cloned [1-2]

References

1. PubMed ID: 17105755
   Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
   "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
   "Physiol Genomics (2007) 29:35-43


2. PubMed ID: 17306260
   Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland
   "Gu Z, Eleswarapu S, Jiang H"
   "FEBS Lett (2007) 581:981-988


3. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125