Search results

mir-199 family in Rfam (RF00144)

Summary
This family consists of the microRNA (miRNA) precursor mir-199 which appears to be specific to humans. Animal miRNAs are transcribed as ~70nt precursors and subsequently processed by the Dicer enzyme to give a ~22nt product. In this case the mature sequence comes from the 3' arm of the precursor. The extents of the hairpin precursors are not generally known and are estimated based on hairpin prediction. The products are thought to have regulatory roles through complementarity to mRNA. The involvement of Dicer in miRNA processing suggests a relationship with the phenomenon of RNA interference. miRNAs are numbered based on the sequence of the mature RNA.
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5'

There are 85 hairpins in the mir-199 family

Name Accession RPM Chromosome Start End Strand Confidence
mmu-mir-199a-1 MI0000241 18091 chr9 21496495 21496564 - High
hsa-mir-199a-1 MI0000242 10221 chr19 10817426 10817496 - High
hsa-mir-199a-2 MI0000281 10210 chr1 172144535 172144644 - High
hsa-mir-199b MI0000282 9807 chr9 128244721 128244830 - High
mmu-mir-199a-2 MI0000713 18117 chr1 162217814 162217923 + High
mmu-mir-199b MI0000714 15654 chr2 32318460 32318569 + High
rno-mir-199a MI0000941 1079 chr13 80125487 80125596 + High
gga-mir-199-2 MI0001220 1409 chr8 4652464 4652571 + -
gga-mir-199-1 MI0001245 1408 chr17 5571579 5571672 + High
dre-mir-199-1 MI0001373 5531 chr20 14875460 14875546 + High
dre-mir-199-2 MI0001374 5528 chr5 1376773 1376868 - -
dre-mir-199-3 MI0001375 2482 chr3 47195137 47195234 - High
ggo-mir-199a MI0002830 - chr1 151190886 151190995 - -
ppa-mir-199a MI0002831 - chr1 151352288 151352397 - -
ppy-mir-199a MI0002832 - chr1 78924227 78924336 + -
ptr-mir-199a-2 MI0002833 - chr1 150507742 150507851 - -
mml-mir-199a-1 MI0002834 1536 chr1 195411983 195412092 + High
sla-mir-199a MI0002835 - None None -
lla-mir-199a MI0002836 - None None -
mne-mir-199a MI0002837 - None None -
fru-mir-199-3 MI0003275 - HE602539.1 8191687 8191785 - -
tni-mir-199-3 MI0003276 - 3 11403050 11403144 - -
fru-mir-199-2 MI0003329 - HE602540.1 7219400 7219472 + -
tni-mir-199-2 MI0003330 - 4 2900522 2900594 - -
fru-mir-199-1 MI0003358 - HE602554.1 3508828 3508914 + -
tni-mir-199-1 MI0003359 - 15 2934170 2934255 + -
bta-mir-199a-1 MI0004758 3207 chr16 40646156 40646259 - High
xtr-mir-199a MI0004859 - chr4 97341496 97341591 + -
xtr-mir-199b MI0004944 - chr3 127964099 127964208 - -
bta-mir-199b MI0005036 3339 chr11 99127762 99127861 - High
mdo-mir-199b-1 MI0005314 779 chr1 453998859 453998947 - High
oan-mir-199 MI0006890 872 Ultra341 2337896 2338013 - High
mml-mir-199a-2 MI0007662 1531 chr19 10858564 10858634 - High
cfa-mir-199-1 MI0008042 - chr20 50410924 50410984 + -
cfa-mir-199-2 MI0008124 - chr7 26812766 26812824 + -
cfa-mir-199-3 MI0008151 - chr9 55262354 55262412 + -
ssc-mir-199b MI0008219 947 chr1 302681826 302681899 - High
ptr-mir-199a-1 MI0008571 - chr19 11396978 11397047 - -
ptr-mir-199b MI0008572 - chr9 106385739 106385847 - -
bta-mir-199a-2 MI0009770 3202 chr7 16580964 16581034 - High
eca-mir-199a MI0012712 8479 chr5 8104732 8104810 - High
eca-mir-199b MI0012922 7374 chr25 31553692 31553760 - High
ssc-mir-199a-2 MI0013093 1134 chr2 69991779 69991858 - High
tgu-mir-199-1 MI0013802 - chr17 5549805 5549875 + -
tgu-mir-199-2 MI0013847 - chr8_random 1629749 1629876 + -
ppy-mir-199b MI0014860 - chr9 125179688 125179798 - -
ssc-mir-199a-1 MI0016621 1123 chr9 126105251 126105326 - High
pma-mir-199a MI0017101 - GL476397.1 465339 465417 - -
pma-mir-199b MI0017102 - None None -
aca-mir-199a-1 MI0018794 - chr2 80766220 80766316 - -
aca-mir-199a-2 MI0018795 - AAWZ02037129.1 4064 4162 + -
aca-mir-199b MI0018796 - GL343763.1 95903 96000 + -
ola-mir-199a-1 MI0019422 - 4 4302500 4302597 + -
ola-mir-199a-2 MI0019455 - 8 9465167 9465270 + -
ola-mir-199a-3 MI0019485 - 12 11677445 11677547 + -
ola-mir-199a-4 MI0019518 - 17 16117948 16118038 + -
sha-mir-199a MI0019611 - GL841403.1 248906 249055 + -
cgr-mir-199b MI0020449 43 None None Low
pol-mir-199a-1 MI0022203 - None None -
pol-mir-199a-2 MI0022204 - None None -
ccr-mir-199 MI0023359 - None None -
mdo-mir-199b-2 MI0023791 693 chr2 64374175 64374233 - -
mdo-mir-199b-3 MI0023807 691 chr3 430288134 430288194 + -
ipu-mir-199a-1 MI0024547 - None None -
ipu-mir-199a-2 MI0024548 - None None -
ipu-mir-199a-4 MI0024549 - None None -
ipu-mir-199a-3 MI0024550 - None None -
oar-mir-199a MI0025262 12377 chr12 37693649 37693752 - High
hhi-mir-199a MI0025436 - None None -
ssa-mir-199a-1 MI0026565 - None None -
ssa-mir-199a-2 MI0026566 - None None -
ssa-mir-199a-3 MI0026567 - None None -
ssa-mir-199a-4 MI0026568 - None None -
efu-mir-199-2 MI0028631 - JH977791.1 1080038 1080120 + -
efu-mir-199-1 MI0028769 - JH977644.1 1291613 1291693 - -
efu-mir-199-3 MI0028825 - JH977690.1 5464428 5464508 + -
chi-mir-199a MI0030674 - chr16 39507404 39507513 - -
chi-mir-199b MI0030675 - None None -
chi-mir-199c MI0030676 - None None -
tch-mir-199b MI0031138 - KB320843.1 1502684 1502743 + -
tch-mir-199a MI0031188 - KB320481.1 6496580 6496639 + -
oha-mir-199a MI0031392 - AZIM01003287.1 39727 39799 - -
oha-mir-199b MI0031393 - AZIM01003798.1 142031 142121 - -
oha-mir-199c MI0031394 - AZIM01005115.1 134705 134801 - -
cgr-mir-199a-2 MI0033082 368 JH000079.1 375502 375611 - Low



Comments or questions? Email mirbase@manchester.ac.uk