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mir-199 family (RF00144)

Summary
This family consists of the microRNA (miRNA) precursor mir-199 which appears to be specific to humans. Animal miRNAs are transcribed as ~70nt precursors and subsequently processed by the Dicer enzyme to give a ~22nt product. In this case the mature sequence comes from the 3' arm of the precursor. The extents of the hairpin precursors are not generally known and are estimated based on hairpin prediction. The products are thought to have regulatory roles through complementarity to mRNA. The involvement of Dicer in miRNA processing suggests a relationship with the phenomenon of RNA interference. miRNAs are numbered based on the sequence of the mature RNA.

There are 85 hairpins in the mir-199 family

Name Accession RPM Chromosome Start End Strand Confidence
mmu-mir-199a-1 MI0000241 18091 9 21407791 21407860 - High
hsa-mir-199a-1 MI0000242 10221 chr19 10817426 10817496 - High
hsa-mir-199a-2 MI0000281 10210 chr1 172144535 172144644 - High
hsa-mir-199b MI0000282 9807 chr9 128244721 128244830 - High
mmu-mir-199a-2 MI0000713 18117 1 162045383 162045492 + High
mmu-mir-199b MI0000714 15654 2 32208472 32208581 + High
rno-mir-199a MI0000941 1079 chr13 80125487 80125596 + High
gga-mir-199-2 MI0001220 1409 8 4639868 4639975 + High
gga-mir-199-1 MI0001245 1408 17 5709293 5709386 + High
dre-mir-199-1 MI0001373 5531 chr20 14875460 14875546 + High
dre-mir-199-2 MI0001374 5528 chr5 1376773 1376868 - High
dre-mir-199-3 MI0001375 2482 chr3 47195137 47195234 - High
ggo-mir-199a MI0002830 - chr1 151190886 151190995 - High
ppa-mir-199a MI0002831 - chr1 151352288 151352397 - -
ppy-mir-199a MI0002832 - chr1 78924227 78924336 + -
ptr-mir-199a-2 MI0002833 - chr1 150507742 150507851 - High
mml-mir-199a-1 MI0002834 1536 1 29445606 29445715 - High
sla-mir-199a MI0002835 - None None -
lla-mir-199a MI0002836 - None None -
mne-mir-199a MI0002837 - None None -
fru-mir-199-3 MI0003275 - ref|NC_042289.1| 9726651 9726749 - High
tni-mir-199-3 MI0003276 - 3 11403050 11403144 - High
fru-mir-199-2 MI0003329 - ref|NC_042290.1| 9790040 9790112 + High
tni-mir-199-2 MI0003330 - 4 2900522 2900594 - High
fru-mir-199-1 MI0003358 - ref|NC_042304.1| 5583993 5584079 + High
tni-mir-199-1 MI0003359 - 15 2934170 2934255 + High
bta-mir-199a-1 MI0004758 3207 16 39625344 39625447 - High
xtr-mir-199a MI0004859 - 4 107415555 107415650 + High
xtr-mir-199b MI0004944 - 3 138803468 138803577 - High
bta-mir-199b MI0005036 3339 11 98855737 98855836 - High
mdo-mir-199b-1 MI0005314 779 ref|NC_077227.1| 461060120 461060208 - High
oan-mir-199-1 MI0006890 872 16 5356192 5356309 - High
mml-mir-199a-2 MI0007662 1531 19 10581832 10581902 - High
cfa-mir-199-1 MI0008042 - 20 50932583 50932643 + High
cfa-mir-199-2 MI0008124 - 7 26563538 26563596 + High
cfa-mir-199-3 MI0008151 - 9 56184394 56184452 + High
ssc-mir-199b MI0008219 947 chr1 302681826 302681899 - High
ptr-mir-199a-1 MI0008571 - chr19 11396978 11397047 - High
ptr-mir-199b MI0008572 - chr9 106385739 106385847 - High
bta-mir-199a-2 MI0009770 3202 7 15283412 15283482 - High
eca-mir-199a MI0012712 8479 5 8123279 8123357 - High
eca-mir-199b MI0012922 7374 25 32139033 32139101 - High
ssc-mir-199a-2 MI0013093 1134 chr2 69991779 69991858 - High
tgu-mir-199-1 MI0013802 - chr17 5549805 5549875 + -
tgu-mir-199-2 MI0013847 - chr8_random 1629749 1629876 + -
ppy-mir-199b MI0014860 - chr9 125179688 125179798 - -
ssc-mir-199a-1 MI0016621 1123 chr9 126105251 126105326 - High
pma-mir-199a MI0017101 - ref|NC_046090.1| 4834910 4834988 + -
pma-mir-199b MI0017102 - ref|NC_046118.1| 9684019 9684098 + -
aca-mir-199a-1 MI0018794 - chr2 80766220 80766316 - High
aca-mir-199a-2 MI0018795 - AAWZ02037129.1 4064 4162 + High
aca-mir-199b MI0018796 - GL343763.1 95903 96000 + High
ola-mir-199a-1 MI0019422 - 4 4302500 4302597 + High
ola-mir-199a-2 MI0019455 - 8 9465167 9465270 + High
ola-mir-199a-3 MI0019485 - 12 11677445 11677547 + High
ola-mir-199a-4 MI0019518 - 17 16117948 16118038 + High
sha-mir-199a MI0019611 - GL841403.1 248906 249055 + -
cgr-mir-199b MI0020449 43 None None High
pol-mir-199a-1 MI0022203 - None None -
pol-mir-199a-2 MI0022204 - None None -
ccr-mir-199 MI0023359 - None None High
mdo-mir-199b-2 MI0023791 693 ref|NC_077228.1| 66985525 66985585 - High
mdo-mir-199b-3 MI0023807 691 ref|NC_077229.2| 440977945 440978007 - High
ipu-mir-199a-1 MI0024547 - None None -
ipu-mir-199a-2 MI0024548 - None None -
ipu-mir-199a-4 MI0024549 - None None -
ipu-mir-199a-3 MI0024550 - None None -
oar-mir-199a MI0025262 12377 chr12 37693649 37693752 - High
hhi-mir-199a MI0025436 - None None -
ssa-mir-199a-1 MI0026565 - None None High
ssa-mir-199a-2 MI0026566 - None None High
ssa-mir-199a-3 MI0026567 - None None High
ssa-mir-199a-4 MI0026568 - None None High
efu-mir-199-2 MI0028631 - JH977791.1 1080038 1080120 + High
efu-mir-199-1 MI0028769 - JH977644.1 1291613 1291693 - High
efu-mir-199-3 MI0028825 - JH977690.1 5464428 5464508 + High
chi-mir-199a MI0030674 - chr16 39507404 39507513 - High
chi-mir-199b MI0030675 - None None High
chi-mir-199c MI0030676 - None None High
tch-mir-199b MI0031138 - KB320843.1 1502684 1502743 + High
tch-mir-199a MI0031188 - KB320481.1 6496580 6496639 + High
oha-mir-199a MI0031392 - AZIM01003287.1 39727 39799 - -
oha-mir-199b MI0031393 - AZIM01003798.1 142031 142121 - -
oha-mir-199c MI0031394 - AZIM01005115.1 134705 134801 - -
cgr-mir-199a-2 MI0033082 368 JH000079.1 375502 375611 - High



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