miRBase entry: ola-mir-199a-4

Stem-loop ola-mir-199a-4

Accession

MI0019518

Description

Oryzias latipes ola-mir-199a-4 precursor miRNA

Literature search

2 open access papers mention ola-mir-199a-4
(2 sentences)

Sequence

auuccggcuccguccaCCCAGUGUUCAGACUACCUGUUcauugucauacugguguACAGUAGUCUGCACAUUGGUUAgacugggccgggcu
..((((((((.(((...(((((((.((((((((.(((.((((........)))).))))))))))).)))))))...))).))))))))..

Structure

au        c   caC       U        C   U    guc 
  uccggcuc guc   CCAGUGU CAGACUAC UGU cauu   a
  |||||||| |||   ||||||| |||||||| ||| ||||    
  gggccggg cag   GGUUACA GUCUGAUG ACA gugg   u
uc        u   AUU       C        -   u    uca

Annotation confidence Not enough data

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Genome context

17: 16117948-16118038 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ola-mir-199a-4

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ola-miR-199a-5p

Accession	MIMAT0022538
Description	Oryzias latipes ola-miR-199a-5p mature miRNA
Sequence	17 - CCCAGUGUUCAGACUACCUGUU - 38
Evidence	experimental SOLiD [1]

Mature ola-miR-199a-3p

Accession	MIMAT0022539
Description	Oryzias latipes ola-miR-199a-3p mature miRNA
Sequence	56 - ACAGUAGUCUGCACAUUGGUUA - 77
Evidence	experimental SOLiD [1]

References

PubMed ID: 21143817
Discovery and characterization of medaka miRNA genes by next generation sequencing platform
Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
BMC Genomics (2010) 11:S8