Stem-loop tni-mir-199-2

Accession

MI0003330

Description

Tetraodon nigroviridis tni-mir-199-2 precursor miRNA

Sequence

54449 reads, 1996.0 reads per million, 3 experiments

ccgccugCCCAGUGUUCAGACUACCUGUUCaggaaguagugguuguACAGUAGUCUGCACAUUGGUUaggcug
..(((((.(((((((.((((((((.(((.(((..........))).))))))))))).))))))).)))))..

Structure

cc     C       U        C   U   gaag 
  gccug CCAGUGU CAGACUAC UGU Cag    u
  ||||| ||||||| |||||||| ||| |||     
  cggaU GGUUACA GUCUGAUG ACA guu    a
gu     U       C        -   u   ggug 

Annotation confidence High

Comments

This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

4: 2900522-2900594 [-]

Mature tni-miR-199-5p

• Accession: MIMAT0002960
• Description: Tetraodon nigroviridis tni-miR-199-5p mature miRNA
• Sequence: 8 - CCCAGUGUUCAGACUACCUGUUC - 30
• Evidence: not_experimental

Mature tni-miR-199-3p

• Accession: MIMAT0052948
• Description: Tetraodon nigroviridis tni-miR-199-3p mature miRNA
• Sequence: 47 - ACAGUAGUCUGCACAUUGGUU - 67
• Evidence: not_experimental

References