Accession
MI0000241
Symbol
MGI:
Mir199a-1
Description
Mus musculus
mmu-mir-199a-1 precursor miRNA mir-199
Gene
family?
family?
RF00144;
mir-199
Literature search
163 open access papers mention mmu-mir-199a-1
(1314 sentences)
(1314 sentences)
Sequence
3288633
reads,
15558
reads per million, 106 experiments
gccauCCCAGUGUUCAGACUACCUGUUCaggaggcugggacauguACAGUAGUCUGCACAUUGGUUAggc
(((...(((((((.((((((((.(((((((....)))).......))))))))))).)))))))...)))
(((...(((((((.((((((((.(((((((....)))).......))))))))))).)))))))...)))
Structure
auC U C ------- g gcc CCAGUGU CAGACUAC UGU UCag a ||| ||||||| |||||||| ||| |||| cgg GGUUACA GUCUGAUG ACA gguc g AUU C - uguacag g
Annotation confidence
High
Do you think this miRNA is real?
Comments
The hairpin precursor sequence mir-199 maps to two loci within 50 kb on mouse chromosome 9. This sequence was named mir-199 in [1] and [2], but is renamed here to avoid overlap with the predicted homologues of human mir-199a-2 and mir-199b. Landgraf et al. demonstrate comparable expression for products from both arms of the hairpin, which are therefore renamed miR-199a-5p and miR-199a-3p here [4]. The mature sequences shown here represent the most commonly cloned forms from large-scale cloning studies [4]. The 5' end of the miRNA may be offset with respect to previous annotations.
Genome context
chr9: 21496495-21496564 [-]
Database links
Mature mmu-miR-199a-5p
| Accession | MIMAT0000229 |
| Description | Mus musculus mmu-miR-199a-5p mature miRNA |
| Sequence | 6 - CCCAGUGUUCAGACUACCUGUUC - 28 |
| Evidence |
experimental
cloned [5], Illumina [6-7] |
| Database links |
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| Predicted targets |
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Mature mmu-miR-199a-3p
| Accession | MIMAT0000230 |
| Description | Mus musculus mmu-miR-199a-3p mature miRNA |
| Sequence | 46 - ACAGUAGUCUGCACAUUGGUUA - 67 |
| Evidence |
experimental
cloned [1,5], Illumina [6-7] |
| Database links |
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| Predicted targets |
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References
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