Stem-loop cfa-mir-199-3

Accession

MI0008151

Description

Canis lupus familiaris cfa-mir-199-3 precursor miRNA

Sequence

3169314 reads, 4126.0 reads per million, 82 experiments

CCAGUGUUUAGACUAUCUGUUcaggacucccaaauuguACAGUAGUCUGCACAUUGGUU
(((((((.(((((((.((((.(((..........))).))))))))))).)))))))..

Structure

--       U       U    U   gacu 
  CCAGUGU UAGACUA CUGU cag    c
  ||||||| ||||||| |||| |||     
  GGUUACA GUCUGAU GACA guu    c
UU       C       -    u   aaac 

Annotation confidence High

Genome context

9: 56184394-56184452 [+]

Mature cfa-miR-199-3-5p

• Accession: MIMAT0051756
• Description: Canis lupus familiaris cfa-miR-199-3-5p mature miRNA
• Sequence: 1 - CCAGUGUUUAGACUAUCUGUU - 21
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-199-3p

• Accession: MIMAT0006642
• Description: Canis lupus familiaris cfa-miR-199-3p mature miRNA
• Sequence: 39 - ACAGUAGUCUGCACAUUGGUU - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415