Stem-loop mdo-mir-199b-1

Accession

MI0005314

Description

Monodelphis domestica mdo-mir-199b-1 precursor miRNA

Sequence

34778 reads, 768 reads per million, 5 experiments

cuccacuccgucuaCCCAGUGUUUAGACUAUCUGUUCaggacuccaauauuguACAGUAGUCUGCACAUUGGUUaggcugggcugggcu
.(((((((.(((((.(((((((.(((((((.((((.(((..........))).))))))))))).))))))).))))).))).))))..

Structure

-c    -   c     C       U       U    U   gacu 
  ucca cuc gucua CCAGUGU UAGACUA CUGU Cag    c
  |||| ||| ||||| ||||||| ||||||| |||| |||     
  gggu ggg cggaU GGUUACA GUCUGAU GACA guu    c
uc    c   u     U       C       -    u   auaa 

Annotation confidence Medium

Genome context

chr1: 453998859-453998947 [-]

Mature mdo-miR-199b-1-5p

• Accession: MIMAT0004125
• Description: Monodelphis domestica mdo-miR-199b-1-5p mature miRNA
• Sequence: 15 - CCCAGUGUUUAGACUAUCUGUUC - 37
• Evidence: experimental ; Illumina [2]

Mature mdo-miR-199b-3p

• Accession: MIMAT0026678
• Description: Monodelphis domestica mdo-miR-199b-3p mature miRNA
• Sequence: 54 - ACAGUAGUCUGCACAUUGGUU - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45