Stem-loop chi-mir-199a

Accession

MI0030674

Description

Capra hircus chi-mir-199a precursor miRNA

Literature search

4 open access papers mention chi-mir-199a
(5 sentences)

Sequence

uggaagcuucuggagauccugcuccgucgcCCCAGUGUUCAGACUACCUGUUCaggacaaugccguuguACAGUAGUCUGCACAUUGGUUagacugggcaagggagagca
.....(((.((.....((((((((.(((...(((((((.((((((((.(((.((((......))..)).))))))))))).)))))))...))).)))).))))))))).

Structure

uggaa   u  ggaga    -    c   gcC       U        C   U  --  ac 
     gcu cu     uccu gcuc guc   CCAGUGU CAGACUAC UGU Ca  gg  a
     ||| ||     |||| |||| |||   ||||||| |||||||| ||| ||  ||   
     cga ga     ggga cggg cag   GGUUACA GUCUGAUG ACA gu  cc  a
----a   -  -----    a    u   aUU       C        -   u  ug  gu 

Annotation confidence Low

Genome context

chr16: 39507404-39507513 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from chi-mir-199a

Mature chi-miR-199a-5p

• Accession: MIMAT0036036
• Description: Capra hircus chi-miR-199a-5p mature miRNA
• Sequence: 31 - CCCAGUGUUCAGACUACCUGUUC - 53
• Evidence: experimental ; Illumina [1]

Mature chi-miR-199a-3p

• Accession: MIMAT0036037
• Description: Capra hircus chi-miR-199a-3p mature miRNA
• Sequence: 70 - ACAGUAGUCUGCACAUUGGUU - 90
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40