Stem-loop oan-mir-199-1

Accession

MI0006890

Description

Ornithorhynchus anatinus oan-mir-199-1 precursor miRNA

Sequence

27610 reads, 1096.0 reads per million, 5 experiments

uagaagcguccggagauccugcuccgucgcCCCAGUGUUCAGACUACCUGUUCAggacaaugcuguuguACAGUAGUCUGCACAUUGGUUAgacugggcaagggaaagcggcgaaaug
......((.(((....((((((((.(((...(((((((.((((((((.(((....((((....))))..))))))))))).)))))))...))).)))).))))....))))).....

Structure

uagaag  u   gaga    -    c   gcC       U        C   UCAg    a 
      cg ccg    uccu gcuc guc   CCAGUGU CAGACUAC UGU    gaca u
      || |||    |||| |||| |||   ||||||| |||||||| |||    ||||  
      gc ggc    ggga cggg cag   GGUUACA GUCUGAUG ACA    uugu g
-guaaa  -   gaaa    a    u   AUU       C        -   --ug    c 

Annotation confidence High

Genome context

16: 5356192-5356309 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from oan-mir-199-1

Mature oan-miR-199-1-5p

• Accession: MIMAT0007172
• Description: Ornithorhynchus anatinus oan-miR-199-1-5p mature miRNA
• Sequence: 31 - CCCAGUGUUCAGACUACCUGUUCA - 54
• Evidence: experimental ; Illumina [1]

Mature oan-miR-199-1-3p

• Accession: MIMAT0007173
• Description: Ornithorhynchus anatinus oan-miR-199-1-3p mature miRNA
• Sequence: 70 - ACAGUAGUCUGCACAUUGGUUA - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004