Stem-loop xtr-mir-199a

Accession

MI0004859

Description

Xenopus tropicalis xtr-mir-199a precursor miRNA

Literature search

4 open access papers mention xtr-mir-199a
(17 sentences)

Sequence

126178 reads, 10618.0 reads per million, 4 experiments

aagaaccugcuccgucgccccAGUGUUCAGACUACCUGUUCaggacaaugcuguuguACAGUAGUCUGCACAUUGGUUAgacugggcaugggacag
..(..(((((((.(((...(((((((.((((((((.(((....((((....))))..))))))))))).)))))))...))).))))).))..)..

Structure

aa aa  -     c   gcc       U        C   UCag    a 
  g  cc ugcuc guc   ccAGUGU CAGACUAC UGU    gaca u
  |  || ||||| |||   ||||||| |||||||| |||    ||||  
  c  gg acggg cag   GGUUACA GUCUGAUG ACA    uugu g
ga ag  u     u   AUU       C        -   --ug    c 

Annotation confidence High

Genome context

4: 107415555-107415650 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from xtr-mir-199a

Mature xtr-miR-199a-5p

• Accession: MIMAT0003618
• Description: Xenopus tropicalis xtr-miR-199a-5p mature miRNA
• Sequence: 22 - AGUGUUCAGACUACCUGUUC - 41
• Evidence: experimental ; Northern [1]

Mature xtr-miR-199a-3p

• Accession: MIMAT0003619
• Description: Xenopus tropicalis xtr-miR-199a-3p mature miRNA
• Sequence: 58 - ACAGUAGUCUGCACAUUGGUUA - 79
• Evidence: not_experimental

References

1. PubMed ID: 18032731
   Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation
   "Tang GQ, Maxwell ES"
   "Genome Res (2008) 18:104-112