Stem-loop cfa-mir-199-1

Accession

MI0008042

Description

Canis lupus familiaris cfa-mir-199-1 precursor miRNA

Sequence

3174521 reads, 4275.0 reads per million, 82 experiments

CCAGUGUUCAGACUACCUGUUcagggggcucugaauguguACAGUAGUCUGCACAUUGGUU
(((((((.((((((((.((((((((....)))))......))))))))))).)))))))..

Structure

--       U        C   ------     g 
  CCAGUGU CAGACUAC UGU      Ucagg g
  ||||||| |||||||| |||      |||||  
  GGUUACA GUCUGAUG ACA      agucu g
UU       C        -   ugugua     c 

Annotation confidence High

Genome context

20: 50932583-50932643 [+]

Mature cfa-miR-199-5p

• Accession: MIMAT0051755
• Description: Canis lupus familiaris cfa-miR-199-5p mature miRNA
• Sequence: 1 - CCAGUGUUCAGACUACCUGUU - 21
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-199-3p

• Accession: MIMAT0006642
• Description: Canis lupus familiaris cfa-miR-199-3p mature miRNA
• Sequence: 41 - ACAGUAGUCUGCACAUUGGUU - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415