Accession
MI0001220
Description
Gallus gallus
gga-mir-199-2 precursor miRNA mir-199
Gene
family?
family?
RF00144;
mir-199
Literature search
8 open access papers mention gga-mir-199-2
(25 sentences)
(25 sentences)
Sequence
83323
reads,
1405
reads per million, 5 experiments
gaagcguccggagauccugcuccgucgcCCCAGUGUUCAGACUACCUGUUCaggacaaugcuguugUACAGUAGUCUGCACAUUGGuuagacugggcaagggaaagca
...((.(((((....))(((((.(((...(((((((.((((((((.(((....((((....))))..))))))))))).)))))))...))).)))))..)))..)).
...((.(((((....))(((((.(((...(((((((.((((((((.(((....((((....))))..))))))))))).)))))))...))).)))))..)))..)).
Structure
gaa -g ggagaucc c gcC U C UCag a gc ucc ugcuc guc CCAGUGU CAGACUAC UGU gaca u || ||| ||||| ||| ||||||| |||||||| ||| |||| cg agg acggg cag GGUUACA GUCUGAUG ACA uugu g --a aa ------ga u auu C - --Ug c
Annotation confidence
Not enough data
Do you think this miRNA is real?
Comments
Chicken has two loci predicted to express miR-199. mir-199-2 (MIR:MI0001220) is homologous to mir-199a-2 in human (MIR:MI0000281) and mouse (MIR:MI0000713). mir-199-1 (MIR:MI0001245) is homologous to mir-199b in human (MIR:MI0000282) and mouse (MIR:MI0000714). The expression of chicken miR-199 has been verified experimentally [2].
Genome context
chr8: 4652464-4652571 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from gga-mir-199-2
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature gga-miR-199-5p
| Accession | MIMAT0001152 |
| Description | Gallus gallus gga-miR-199-5p mature miRNA |
| Sequence | 29 - CCCAGUGUUCAGACUACCUGUUC - 51 |
| Evidence |
experimental
cloned [2], Northern [2] |
| Database links |
|
| Predicted targets |
|
Mature gga-miR-199-3p
| Accession | MIMAT0003721 |
| Description | Gallus gallus gga-miR-199-3p mature miRNA |
| Sequence | 67 - UACAGUAGUCUGCACAUUGG - 86 |
| Evidence |
experimental
cloned [2], Northern [2] |
| Database links |
|
| Predicted targets |
|
References
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