Stem-loop fru-mir-199-1

Accession

MI0003358

Description

Fugu rubripes fru-mir-199-1 precursor miRNA

Sequence

uccugcuccgucauCCCAGUGUUCAGACUACCUGUUCaggauuuuacugguguacaguagucugcacauugguuagacagugcaugg
.(((((.(.(((...(((((((.((((((((.(((((((.......))))...))))))))))).)))))))...))).).))).))

Structure

u  -   u c   auC       U        C   ---    ga 
 cc ugc c guc   CCAGUGU CAGACUAC UGU   UCag  u
 || ||| | |||   ||||||| |||||||| |||   ||||  u
 gg acg g cag   gguuaca gucugaug aca   gguc  u
-  u   u a   auu       c        -   ugu    au 

Annotation confidence Not enough data

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

HE602554.1: 3508828-3508914 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from fru-mir-199-1

Mature fru-miR-199

• Accession: MIMAT0002959
• Description: Fugu rubripes fru-miR-199 mature miRNA
• Sequence: 15 - CCCAGUGUUCAGACUACCUGUUC - 37
• Evidence: not_experimental

References