Stem-loop fru-mir-199-1

Accession

MI0003358

Description

Fugu rubripes fru-mir-199-1 precursor miRNA

Literature search

1 open access papers mention fru-mir-199-1
(1 sentences)

Sequence

5087250 reads, 65873.0 reads per million, 12 experiments

uccugcuccgucauCCCAGUGUUCAGACUACCUGUUCaggauuuuacugguguACAGUAGUCUGCACAUUGGUUagacagugcaugg
.(((((.(.(((...(((((((.((((((((.(((((((.......))))...))))))))))).)))))))...))).).))).))

Structure

u  -   u c   auC       U        C   ---    ga 
 cc ugc c guc   CCAGUGU CAGACUAC UGU   UCag  u
 || ||| | |||   ||||||| |||||||| |||   ||||  u
 gg acg g cag   GGUUACA GUCUGAUG ACA   gguc  u
-  u   u a   aUU       C        -   ugu    au 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042304.1|: 5583993-5584079 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from fru-mir-199-1

Mature fru-miR-199-5p

• Accession: MIMAT0002959
• Description: Fugu rubripes fru-miR-199-5p mature miRNA
• Sequence: 15 - CCCAGUGUUCAGACUACCUGUUC - 37
• Evidence: not_experimental

Mature fru-miR-199-3p

• Accession: MIMAT0052848
• Description: Fugu rubripes fru-miR-199-3p mature miRNA
• Sequence: 54 - ACAGUAGUCUGCACAUUGGUU - 74
• Evidence: not_experimental

References