Stem-loop cgr-mir-199a-2

Accession

MI0033082

Description

Cricetulus griseus cgr-mir-199a-2 precursor miRNA

Sequence

673308 reads, 2126.0 reads per million, 55 experiments

uggaagcuucuggagauccugcuccgucgcCCCAGUGUUCAGACUACCUGUUCAGgacaaugccguuguACAGUAGUCUGCACAUUGGUUAGacugggcaagggccagca
.........((((...((((((((.(((...(((((((.((((((((.(((.((((......))..)).))))))))))).)))))))...))).)))).))))))))..

Structure

uggaagcuu    aga    -    c   gcC       U        C   U  --  ac 
         cugg   uccu gcuc guc   CCAGUGU CAGACUAC UGU CA  Gg  a
         ||||   |||| |||| |||   ||||||| |||||||| ||| ||  ||   
         gacc   ggga cggg caG   GGUUACA GUCUGAUG ACA gu  cc  a
-------ac    ---    a    u   AUU       C        -   u  ug  gu 

Annotation confidence High

Genome context

JH000079.1: 375502-375611 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cgr-mir-199a-2

Mature cgr-miR-199a-2-5p

• Accession: MIMAT0041153
• Description: Cricetulus griseus cgr-miR-199a-2-5p mature miRNA
• Sequence: 31 - CCCAGUGUUCAGACUACCUGUUCAG - 55
• Evidence: not_experimental

Mature cgr-miR-199a-3p

• Accession: MIMAT0023837
• Description: Cricetulus griseus cgr-miR-199a-3p mature miRNA
• Sequence: 70 - ACAGUAGUCUGCACAUUGGUUAG - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25689160
   Annotation of additional evolutionary conserved microRNAs in CHO cells from updated genomic data
   "Diendorfer AB, Hackl M, Klanert G, Jadhav V, Reithofer M, Stiefel F, Hesse F, Grillari J, Borth N"
   "Biotechnol Bioeng (2015) 112:1488-1493