Accession
MI0002832
Description
Pongo pygmaeus
ppy-mir-199a precursor miRNA
Sequence
aggaagcuucuggagauccugcuccgucgcCCCAGUGUUCAGACUACCUGUUCaggacaaugccguuguacaguagucugcacauugguuagacugggcaagggagagca
.....(((.((.....((((((((.(((...(((((((.((((((((.(((.((((......))..)).))))))))))).)))))))...))).)))).))))))))).
.....(((.((.....((((((((.(((...(((((((.((((((((.(((.((((......))..)).))))))))))).)))))))...))).)))).))))))))).
Structure
aggaa u ggaga - c gcC U C U -- ac
gcu cu uccu gcuc guc CCAGUGU CAGACUAC UGU Ca gg a
||| || |||| |||| ||| ||||||| |||||||| ||| || ||
cga ga ggga cggg cag gguuaca gucugaug aca gu cc a
----a - ----- a u auu c - u ug gu
Annotation confidence
Not enough data
Do you think this miRNA is real?
Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.
Genome context
chr1: 78924227-78924336 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ppy-mir-199a
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ppy-miR-199a
| Accession | MIMAT0002529 |
| Description | Pongo pygmaeus ppy-miR-199a mature miRNA |
| Sequence | 31 - CCCAGUGUUCAGACUACCUGUUC - 53 |
| Evidence | not_experimental |
References
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