Stem-loop tni-mir-199-3

Accession

MI0003276

Description

Tetraodon nigroviridis tni-mir-199-3 precursor miRNA

Sequence

66511 reads, 2437.0 reads per million, 3 experiments

ccccacccugccugCCCAGUGUUCAGACUACCUGUUCaucagacucaagcugaACAGUAGUCUGCACAUUGGUUaugcagaguugggacacacac
.((((.(((((.((.(((((((.((((((((.((((((.(........).)))))))))))))).))))))).)).)))).).))))........

Structure

-------c    c -    c  C       U        C      u aga 
        ccca c cugc ug CCAGUGU CAGACUAC UGUUCa c   c
        |||| | |||| || ||||||| |||||||| |||||| |    
        gggu g gacg aU GGUUACA GUCUGAUG ACAagu g   u
cacacaca    u a    u  U       C        -      c aac 

Annotation confidence High

Comments

This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

3: 11403050-11403144 [-]

Mature tni-miR-199-5p

• Accession: MIMAT0002960
• Description: Tetraodon nigroviridis tni-miR-199-5p mature miRNA
• Sequence: 15 - CCCAGUGUUCAGACUACCUGUUC - 37
• Evidence: not_experimental

Mature tni-miR-199-3p

• Accession: MIMAT0052948
• Description: Tetraodon nigroviridis tni-miR-199-3p mature miRNA
• Sequence: 54 - ACAGUAGUCUGCACAUUGGUU - 74
• Evidence: not_experimental

References