Stem-loop tni-mir-199-1

Accession

MI0003359

Description

Tetraodon nigroviridis tni-mir-199-1 precursor miRNA

Sequence

54436 reads, 1995.0 reads per million, 3 experiments

ccggcuccguccaCCCAGUGUUCAGACUACCUGUUCauugucauacugguguACAGUAGUCUGCACAUUGGUUagacugggcacgg
(((((((.(((...(((((((.((((((((.(((.((((........)))).))))))))))).)))))))...))).)))).)))

Structure

   -    c   caC       U        C   U    guc 
ccg gcuc guc   CCAGUGU CAGACUAC UGU Cauu   a
||| |||| |||   ||||||| |||||||| ||| ||||    
ggc cggg cag   GGUUACA GUCUGAUG ACA gugg   u
   a    u   aUU       C        -   u    uca 

Annotation confidence High

Comments

This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

15: 2934170-2934255 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from tni-mir-199-1

Mature tni-miR-199-5p

• Accession: MIMAT0002960
• Description: Tetraodon nigroviridis tni-miR-199-5p mature miRNA
• Sequence: 14 - CCCAGUGUUCAGACUACCUGUUC - 36
• Evidence: not_experimental

Mature tni-miR-199-3p

• Accession: MIMAT0052948
• Description: Tetraodon nigroviridis tni-miR-199-3p mature miRNA
• Sequence: 53 - ACAGUAGUCUGCACAUUGGUU - 73
• Evidence: not_experimental

References