Stem-loop ptr-mir-199a-2

Accession

MI0002833

Description

Pan troglodytes ptr-mir-199a-2 precursor miRNA

Literature search

2 open access papers mention ptr-mir-199a-2
(5 sentences)

Sequence

791921 reads, 9199.0 reads per million, 24 experiments

aggaagcuucuggagauccugcuccgucgcCCCAGUGUUCAGACUACCUGUUcaggacaaugccguuguACAGUAGUCUGCACAUUGGUUagacugggcaagggagagca
.....(((.((.....((((((((.(((...(((((((.((((((((.(((.((((......))..)).))))))))))).)))))))...))).)))).))))))))).

Structure

aggaa   u  ggaga    -    c   gcC       U        C   U  --  ac 
     gcu cu     uccu gcuc guc   CCAGUGU CAGACUAC UGU ca  gg  a
     ||| ||     |||| |||| |||   ||||||| |||||||| ||| ||  ||   
     cga ga     ggga cggg cag   GGUUACA GUCUGAUG ACA gu  cc  a
----a   -  -----    a    u   aUU       C        -   u  ug  gu 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr1: 150507742-150507851 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ptr-mir-199a-2

Mature ptr-miR-199a-5p

• Accession: MIMAT0002530
• Description: Pan troglodytes ptr-miR-199a-5p mature miRNA
• Sequence: 31 - CCCAGUGUUCAGACUACCUGUU - 52
• Evidence: not_experimental

Mature ptr-miR-199a-3p

• Accession: MIMAT0009192
• Description: Pan troglodytes ptr-miR-199a-3p mature miRNA
• Sequence: 70 - ACAGUAGUCUGCACAUUGGUU - 90
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24