Stem-loop ptr-mir-199a-2

Accession

MI0002833

Description

Pan troglodytes ptr-mir-199a-2 precursor miRNA

Literature search

2 open access papers mention ptr-mir-199a-2
(5 sentences)

Sequence

aggaagcuucuggagauccugcuccgucgcCCCAGUGUUCAGACUACCUGUUCaggacaaugccguuguacaguagucugcacauugguuagacugggcaagggagagca
.....(((.((.....((((((((.(((...(((((((.((((((((.(((.((((......))..)).))))))))))).)))))))...))).)))).))))))))).

Structure

aggaa   u  ggaga    -    c   gcC       U        C   U  --  ac 
     gcu cu     uccu gcuc guc   CCAGUGU CAGACUAC UGU Ca  gg  a
     ||| ||     |||| |||| |||   ||||||| |||||||| ||| ||  ||   
     cga ga     ggga cggg cag   gguuaca gucugaug aca gu  cc  a
----a   -  -----    a    u   auu       c        -   u  ug  gu 

Annotation confidence Low

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr1: 150507742-150507851 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ptr-mir-199a-2

Mature ptr-miR-199a-5p

• Accession: MIMAT0002530
• Description: Pan troglodytes ptr-miR-199a-5p mature miRNA
• Sequence: 31 - CCCAGUGUUCAGACUACCUGUUC - 53
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24