Stem-loop bta-mir-199b

Accession

MI0005036

Description

Bos taurus bta-mir-199b precursor miRNA

Literature search

52 open access papers mention bta-mir-199b
(285 sentences)

Sequence

24282079 reads, 9695.0 reads per million, 319 experiments

ccuccacuccgucuaCCCAGUGUUUAGACUAUCUGUUCaggacucccaaauuguACAGUAGUCUGCACAUUGGUUAGgcugggcuggguuagacccucgg
..(((((((.(((((.(((((((.(((((((.((((.(((..........))).))))))))))).))))))).))))).))).))))............

Structure

----------cc    -   c     C       U       U    U   gacu 
            ucca cuc gucua CCAGUGU UAGACUA CUGU Cag    c
            |||| ||| ||||| ||||||| ||||||| |||| |||     
            gggu ggg cgGAU GGUUACA GUCUGAU GACA guu    c
ggcucccagauu    c   u     U       C       -    u   aaac 

Annotation confidence High

Genome context

11: 98855737-98855836 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from bta-mir-199b

Mature bta-miR-199b-5p

• Accession: MIMAT0003821
• Description: Bos taurus bta-miR-199b-5p mature miRNA
• Sequence: 16 - CCCAGUGUUUAGACUAUCUGUUC - 38
• Evidence: experimental ; cloned [1-2]

Mature bta-miR-199b-3p

• Accession: MIMAT0060958
• Description: Bos taurus bta-miR-199b-3p mature miRNA
• Sequence: 55 - ACAGUAGUCUGCACAUUGGUUAG - 77
• Evidence: experimental ; cloned [1-2]

References

1. PubMed ID: 17105755
   Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
   "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
   "Physiol Genomics (2007) 29:35-43


2. PubMed ID: 17306260
   Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland
   "Gu Z, Eleswarapu S, Jiang H"
   "FEBS Lett (2007) 581:981-988