Stem-loop ssa-mir-199a-1

Accession

MI0026565

Description

Salmo salar ssa-mir-199a-1 precursor miRNA

Sequence

8613455 reads, 39331.0 reads per million, 87 experiments

CCCAGUGUUCAGACUACCUGUUcagggucuuacugguguACAGUAGUCUGCACAUUGGUU
.(((((((.((((((((.(((((((.......))))...))))))))))).)))))))..

Structure

-C       U        C   ---    gg 
  CCAGUGU CAGACUAC UGU   Ucag  u
  ||||||| |||||||| |||   ||||  c
  GGUUACA GUCUGAUG ACA   gguc  u
UU       C        -   ugu    au 

Annotation confidence High

Genome context

Unknown

Mature ssa-miR-199a-5p

• Accession: MIMAT0032460
• Description: Salmo salar ssa-miR-199a-5p mature miRNA
• Sequence: 1 - CCCAGUGUUCAGACUACCUGUU - 22
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-199a-3p

• Accession: MIMAT0032461
• Description: Salmo salar ssa-miR-199a-3p mature miRNA
• Sequence: 40 - ACAGUAGUCUGCACAUUGGUU - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482