Stem-loop ola-mir-199a-1

Accession

MI0019422

Description

Oryzias latipes ola-mir-199a-1 precursor miRNA

Literature search

2 open access papers mention ola-mir-199a-1
(2 sentences)

Sequence

2108624 reads, 15033.0 reads per million, 48 experiments

aggcauccugcuccgucauCCCAGUGUUCAGACUACCUGUUCagaaucuuccugguguACAGUAGUCUGCACAUUGGUUagacugugcauggaaguau
..((.((((((.(.(((...(((((((.((((((((.(((((((.......))))...))))))))))).)))))))...))).).))).))).))..

Structure

ag  a   -   u c   auC       U        C   ---    aa 
  gc ucc ugc c guc   CCAGUGU CAGACUAC UGU   UCag  u
  || ||| ||| | |||   ||||||| |||||||| |||   ||||  c
  ug agg acg g cag   GGUUACA GUCUGAUG ACA   gguc  u
ua  a   u   u u   aUU       C        -   ugu    cu 

Annotation confidence High

Genome context

4: 4302500-4302597 [+]

Mature ola-miR-199a-5p

• Accession: MIMAT0022538
• Description: Oryzias latipes ola-miR-199a-5p mature miRNA
• Sequence: 20 - CCCAGUGUUCAGACUACCUGUUC - 42
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-199a-3p

• Accession: MIMAT0022539
• Description: Oryzias latipes ola-miR-199a-3p mature miRNA
• Sequence: 59 - ACAGUAGUCUGCACAUUGGUU - 79
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8