Stem-loop aca-mir-199b

Accession

MI0018796

Description

Anolis carolinensis aca-mir-199b precursor miRNA

Sequence

126702 reads, 43613.0 reads per million, 2 experiments

ccuccacuccgucugCCCAGUGUUCGGACUACCUGUUcaggacuacgagauuguACAGUAGUCUGCACAUUGGUUaggcugugcugggauauaccgca
((..(((...(((((.(((((((.((((((((.(((.(((..........))).))))))))))).))))))).))))).)))..))...........

Structure

-----------  uc   ucc     C       U        C   U   gacu 
           cc  cac   gucug CCAGUGU CGGACUAC UGU cag    a
           ||  |||   ||||| ||||||| |||||||| ||| |||     
           gg  gug   cggaU GGUUACA GUCUGAUG ACA guu    c
acgccauauag  uc   --u     U       C        -   u   agag 

Annotation confidence High

Genome context

GL343763.1: 95903-96000 [+]

Mature aca-miR-199b-5p

• Accession: MIMAT0021835
• Description: Anolis carolinensis aca-miR-199b-5p mature miRNA
• Sequence: 16 - CCCAGUGUUCGGACUACCUGUU - 37
• Evidence: experimental ; Illumina [1]

Mature aca-miR-199b-3p

• Accession: MIMAT0057915
• Description: Anolis carolinensis aca-miR-199b-3p mature miRNA
• Sequence: 55 - ACAGUAGUCUGCACAUUGGUU - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21775315
   MicroRNAs support a turtle + lizard clade
   "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
   "Biol Lett (2012) 8:104-107