Stem-loop dre-mir-199-3

Accession

MI0001375

Description

Danio rerio dre-mir-199-3 precursor miRNA mir-199

Gene
family

RF00144; mir-199

Literature search

9 open access papers mention dre-mir-199-3
(16 sentences)

Sequence

27646 reads, 2258 reads per million, 11 experiments

ccucccccucgccugCCCAGUGUUCAGACUACCUGUUCaucaugcugcagcugaACAGUAGUCCGCACAUUGGUUaggcugggcugggacacacacac
..(((((((.(((((.(((((((.(.((((((.((((((.(........).)))))))))))).).))))))).))))).)))..)))).........

Structure

-------cc    --   c     C       U A      C      u aug 
         uccc  ccu gccug CCAGUGU C GACUAC UGUUCa c   c
         ||||  ||| ||||| ||||||| | |||||| |||||| |    
         aggg  ggg cggaU GGUUACA G CUGAUG ACAagu g   u
cacacacac    uc   u     U       C C      -      c acg 

Annotation confidence High

Genome context

chr3: 47195137-47195234 [-]

Mature dre-miR-199-5p

• Accession: MIMAT0001277
• Description: Danio rerio dre-miR-199-5p mature miRNA
• Sequence: 16 - CCCAGUGUUCAGACUACCUGUUC - 38
• Evidence: experimental ; cloned [1-2]

Mature dre-miR-199-3-3p

• Accession: MIMAT0031922
• Description: Danio rerio dre-miR-199-3-3p mature miRNA
• Sequence: 55 - ACAGUAGUCCGCACAUUGGUU - 75
• Evidence: not_experimental

References

1. PubMed ID: 12624257
   Vertebrate microRNA genes
   "Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP"
   "Science (2003) 299:1540


2. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293