Stem-loop aca-mir-199a-2

Accession

MI0018795

Description

Anolis carolinensis aca-mir-199a-2 precursor miRNA

Sequence

120795 reads, 41795.0 reads per million, 2 experiments

auccugcuccgucgcCCCAGUGUUCAGACUACCUGUUcaggacaaugcuguuguACAGUAGUCUGCACAUUGGUUagacugggcaaggaaacgcagcga
.((((((((.(((...(((((((.((((((((.(((....((((....))))..))))))))))).)))))))...))).)))).))))..........

Structure

---------a    -    c   gcC       U        C   Ucag    a 
          uccu gcuc guc   CCAGUGU CAGACUAC UGU    gaca u
          |||| |||| |||   ||||||| |||||||| |||    ||||  
          agga cggg cag   GGUUACA GUCUGAUG ACA    uugu g
agcgacgcaa    a    u   aUU       C        -   --ug    c 

Annotation confidence High

Genome context

AAWZ02037129.1: 4064-4162 [+]

Mature aca-miR-199a-5p

• Accession: MIMAT0021834
• Description: Anolis carolinensis aca-miR-199a-5p mature miRNA
• Sequence: 16 - CCCAGUGUUCAGACUACCUGUU - 37
• Evidence: experimental ; Illumina [1]

Mature aca-miR-199a-3p

• Accession: MIMAT0057914
• Description: Anolis carolinensis aca-miR-199a-3p mature miRNA
• Sequence: 55 - ACAGUAGUCUGCACAUUGGUU - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21775315
   MicroRNAs support a turtle + lizard clade
   "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
   "Biol Lett (2012) 8:104-107