Stem-loop ptr-mir-199b

Accession

MI0008572

Description

Pan troglodytes ptr-mir-199b precursor miRNA

Literature search

4 open access papers mention ptr-mir-199b
(5 sentences)

Sequence

790866 reads, 9185.0 reads per million, 24 experiments

ccagaggacaccuccacuccgucuaCCCAGUGUUUAGACUAUCUGUUcaggacucccaaauuguACAGUAGUCUGCACAUUGGUUaggcugggcuggguuagacccucg
...((((.....(((((((.(((((.(((((((.(((((((.((((.(((..........))).))))))))))).))))))).))))).))).))))......)))).

Structure

cca    -acacc    -   c     C       U       U    U   gacu 
   gagg      ucca cuc gucua CCAGUGU UAGACUA CUGU cag    c
   ||||      |||| ||| ||||| ||||||| ||||||| |||| |||     
   cucc      gggu ggg cggaU GGUUACA GUCUGAU GACA guu    c
--g    cagauu    c   u     U       C       -    u   aaac 

Annotation confidence High

Genome context

chr9: 106385739-106385847 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ptr-mir-199b

Mature ptr-miR-199b-5p

• Accession: MIMAT0052311
• Description: Pan troglodytes ptr-miR-199b-5p mature miRNA
• Sequence: 26 - CCCAGUGUUUAGACUAUCUGUU - 47
• Evidence: not_experimental

Mature ptr-miR-199b-3p

• Accession: MIMAT0008062
• Description: Pan troglodytes ptr-miR-199b-3p mature miRNA
• Sequence: 65 - ACAGUAGUCUGCACAUUGGUU - 85
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70