miRBase entry: cfa-mir-199-2

Stem-loop cfa-mir-199-2


Accession
MI0008124
Description
Canis lupus familiaris cfa-mir-199-2 precursor miRNA


Sequence

3171823 reads, 4133.0 reads per million, 82 experiments
CCAGUGUUCAGACUACCUGUUcaggacaaugccguuguACAGUAGUCUGCACAUUGGUU
(((((((.((((((((.(((.((((......))..)).))))))))))).)))))))..

Structure
--       U        C   U  --  ac 
  CCAGUGU CAGACUAC UGU ca  gg  a
  ||||||| |||||||| ||| ||  ||   
  GGUUACA GUCUGAUG ACA gu  cc  a
UU       C        -   u  ug  gu 


Annotation confidence High
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Genome context
7: 26563538-26563596 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cfa-mir-199-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cfa-miR-199-5p

Accession MIMAT0051755
Description Canis lupus familiaris cfa-miR-199-5p mature miRNA
Sequence 1 - CCAGUGUUCAGACUACCUGUU - 21
Evidence experimental
Illumina [1]

Mature cfa-miR-199-3p

Accession MIMAT0006642
Description Canis lupus familiaris cfa-miR-199-3p mature miRNA
Sequence 39 - ACAGUAGUCUGCACAUUGGUU - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18392026
    Discovering microRNAs from deep sequencing data using miRDeep
    "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
    "Nat Biotechnol (2008) 26:407-415