Stem-loop ola-mir-199a-3

Accession

MI0019485

Description

Oryzias latipes ola-mir-199a-3 precursor miRNA

Literature search

2 open access papers mention ola-mir-199a-3
(2 sentences)

Sequence

2110381 reads, 14660.0 reads per million, 49 experiments

uaccccuccccccaucccgccugCCCAGUGUUCAGACUACCUGUUCaggaaguagugguuguACAGUAGUCUGCACAUUGGUUaggcugguuagggaagugcg
.........(((...((.(((((.(((((((.((((((((.(((.(((..........))).))))))))))).))))))).))))).))...))).......

Structure

uaccccucc   cau  c     C       U        C   U   gaag 
         ccc   cc gccug CCAGUGU CAGACUAC UGU Cag    u
         |||   || ||||| ||||||| |||||||| ||| |||     
         ggg   gg cggaU GGUUACA GUCUGAUG ACA guu    a
--gcgugaa   auu  u     U       C        -   u   ggug 

Annotation confidence High

Genome context

12: 11677445-11677547 [+]

Mature ola-miR-199a-5p

• Accession: MIMAT0022538
• Description: Oryzias latipes ola-miR-199a-5p mature miRNA
• Sequence: 24 - CCCAGUGUUCAGACUACCUGUUC - 46
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-199a-3p

• Accession: MIMAT0022539
• Description: Oryzias latipes ola-miR-199a-3p mature miRNA
• Sequence: 63 - ACAGUAGUCUGCACAUUGGUU - 83
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8