Stem-loop rno-mir-199a

Accession

MI0000941

Description

Rattus norvegicus rno-mir-199a precursor miRNA

Literature search

67 open access papers mention rno-mir-199a
(260 sentences)

Sequence

1145553 reads, 1079 reads per million, 488 experiments

uggaagcuucuggagauccugcuccgucgcCCCAGUGUUCAGACUACCUGUUCaggacaaugccguuguACAGUAGUCUGCACAUUGGUUAgacugggcaagggccagca
.........((((...((((((((.(((...(((((((.((((((((.(((.((((......))..)).))))))))))).)))))))...))).)))).))))))))..

Structure

uggaagcuu    aga    -    c   gcC       U        C   U  --  ac 
         cugg   uccu gcuc guc   CCAGUGU CAGACUAC UGU Ca  gg  a
         ||||   |||| |||| |||   ||||||| |||||||| ||| ||  ||   
         gacc   ggga cggg cag   GGUUACA GUCUGAUG ACA gu  cc  a
-------ac    ---    a    u   AUU       C        -   u  ug  gu 

Annotation confidence High

Genome context

chr13: 80125487-80125596 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from rno-mir-199a

Mature rno-miR-199a-5p

• Accession: MIMAT0000872
• Description: Rattus norvegicus rno-miR-199a-5p mature miRNA
• Sequence: 31 - CCCAGUGUUCAGACUACCUGUUC - 53
• Evidence: experimental ; cloned [1], SOLiD [3]

Mature rno-miR-199a-3p

• Accession: MIMAT0004738
• Description: Rattus norvegicus rno-miR-199a-3p mature miRNA
• Sequence: 70 - ACAGUAGUCUGCACAUUGGUUA - 91
• Evidence: experimental ; cloned [2], SOLiD [3]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 16766679
   Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
   "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
   "Genes Dev (2006) 20:1732-1743


3. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249