Accession
MI0001245
Description
Gallus gallus
gga-mir-199-1 precursor miRNA mir-199
Gene
family?
family?
RF00144;
mir-199
Literature search
7 open access papers mention gga-mir-199-1
(23 sentences)
(23 sentences)
Sequence
83268
reads,
1404
reads per million, 5 experiments
cuccacuccgucugCCCAGUGUUCAGACUACCUGUUCaggacuacgagauugUACAGUAGUCUGCACAUUGGuuaggcugugcugggauacacc
.(((((.(.(((((.(((((((.((((((((.(((.(((..........))).))))))))))).))))))).))))).).).)))).......
.(((((.(.(((((.(((((((.((((((((.(((.(((..........))).))))))))))).))))))).))))).).).)))).......
Structure
------c - u c C U C U gacu
ucca c c gucug CCAGUGU CAGACUAC UGU Cag a
|||| | | ||||| ||||||| |||||||| ||| |||
gggu g g cggau GGUUACA GUCUGAUG ACA guu c
ccacaua c u u u C - U agag
Annotation confidence
High
Do you think this miRNA is real?
Comments
Chicken has two loci predicted to express miR-199. mir-199-2 (MIR:MI0001220) is homologous to mir-199a-2 in human (MIR:MI0000281) and mouse (MIR:MI0000713). mir-199-1 (MIR:MI0001245) is homologous to mir-199b in human (MIR:MI0000282) and mouse (MIR:MI0000714). The expression of chicken miR-199 has been verified experimentally [2].
Genome context
chr17: 5571579-5571672 [+]
Database links
Mature gga-miR-199-5p
| Accession | MIMAT0001152 |
| Description | Gallus gallus gga-miR-199-5p mature miRNA |
| Sequence | 15 - CCCAGUGUUCAGACUACCUGUUC - 37 |
| Evidence |
experimental
cloned [2], Northern [2] |
| Database links |
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| Predicted targets |
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Mature gga-miR-199-3p
| Accession | MIMAT0003721 |
| Description | Gallus gallus gga-miR-199-3p mature miRNA |
| Sequence | 53 - UACAGUAGUCUGCACAUUGG - 72 |
| Evidence |
experimental
cloned [2], Northern [2] |
| Database links |
|
| Predicted targets |
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References
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