Stem-loop dre-mir-199-1

Accession

MI0001373

Description

Danio rerio dre-mir-199-1 precursor miRNA mir-199

Gene
family

RF00144; mir-199

Literature search

10 open access papers mention dre-mir-199-1
(17 sentences)

Sequence

66460 reads, 5092 reads per million, 11 experiments

uccugcuccgucauCCCAGUGUUCAGACUACCUGUUCaggaucauacuggugUACAGUAGUCUGCACAUUGGUUagacugugcaugg
.(((((.(.(((...(((((((.((((((((.(((((((.......))))...))))))))))).)))))))...))).).))).))

Structure

u  -   u c   auC       U        C   ---    ga 
 cc ugc c guc   CCAGUGU CAGACUAC UGU   UCag  u
 || ||| | |||   ||||||| |||||||| |||   ||||  c
 gg acg g cag   GGUUACA GUCUGAUG ACA   gguc  a
-  u   u u   aUU       C        -   Ugu    au 

Annotation confidence High

Genome context

chr20: 14875460-14875546 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-199-1

Mature dre-miR-199-5p

• Accession: MIMAT0001277
• Description: Danio rerio dre-miR-199-5p mature miRNA
• Sequence: 15 - CCCAGUGUUCAGACUACCUGUUC - 37
• Evidence: experimental ; cloned [1-2]

Mature dre-miR-199-3p

• Accession: MIMAT0003155
• Description: Danio rerio dre-miR-199-3p mature miRNA
• Sequence: 53 - UACAGUAGUCUGCACAUUGGUU - 74
• Evidence: experimental ; array [3], in-situ [3]

References

1. PubMed ID: 12624257
   Vertebrate microRNA genes
   "Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP"
   "Science (2003) 299:1540


2. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293


3. PubMed ID: 15919954
   MicroRNA expression in zebrafish embryonic development
   "Wienholds E, Kloosterman WP, Miska E, Alvarez-Saavedra E, Berezikov E, de Bruijn E, Horvitz HR, Kauppinen S, Plasterk RH"
   "Science (2005) 309:310-311