Stem-loop bta-mir-421

Accession

MI0009828

Description

Bos taurus bta-mir-421 precursor miRNA mir-95

Gene
family

RF04053; mir-95

Literature search

25 open access papers mention bta-mir-421
(146 sentences)

Sequence

187333 reads, 136.0 reads per million, 318 experiments

gcacauuguaggcCUCAUUAAAUGUUUGUUGAAUGaaaaaaugaaucaUCAACAGACAUUAAUUGGGCGCcugcucugugaucuc
.((((..((((((((((...((((((((((((.(((.........)))))))))))))))...)))).))))))..)))).....

Structure

----g    uu      -    UUA            A   aaa 
     caca  guaggc CUCA   AAUGUUUGUUGA UGa   a
     ||||  |||||| ||||   |||||||||||| |||   a
     gugu  cgucCG GGGU   UUACAGACAACU acu   u
cucua    cu      C    UAA            -   aag 

Annotation confidence High

Genome context

X: 76925575-76925659 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-421

Mature bta-miR-421-5p

• Accession: MIMAT0061015
• Description: Bos taurus bta-miR-421-5p mature miRNA
• Sequence: 14 - CUCAUUAAAUGUUUGUUGAAUG - 35
• Evidence: not_experimental

Mature bta-miR-421-3p

• Accession: MIMAT0009314
• Description: Bos taurus bta-miR-421-3p mature miRNA
• Sequence: 49 - UCAACAGACAUUAAUUGGGCGC - 70
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125