Stem-loop bta-mir-543

Accession

MI0009859

Description

Bos taurus bta-mir-543 precursor miRNA

Literature search

23 open access papers mention bta-mir-543
(204 sentences)

Sequence

270072 reads, 163.0 reads per million, 293 experiments

ggugcuuaaggagAAGUUGCCCGUGUCUUUUUCGcuuuauaugugacgAAACAUUCGCGGUGCACUUCUUUuucaguauc
((((((.((((((((((.(((((((....((((((.........).)))))....))))).)))))))))))).))))))

Structure

      u          U  -     UCUU     - uuu 
ggugcu aaggagAAGU GC CCGUG    UUUCG c   a
|||||| |||||||||| || |||||    ||||| |   u
cuauga uuUUUCUUCA CG GGCGC    AAAgc g   a
      c          -  U     UUAC     a ugu 

Annotation confidence High

Genome context

21: 65922464-65922543 [+]

Clustered miRNAs

22 other miRNAs are < 10 kb from bta-mir-543

Mature bta-miR-543-5p

• Accession: MIMAT0061025
• Description: Bos taurus bta-miR-543-5p mature miRNA
• Sequence: 14 - AAGUUGCCCGUGUCUUUUUCG - 34
• Evidence: not_experimental

Mature bta-miR-543-3p

• Accession: MIMAT0009344
• Description: Bos taurus bta-miR-543-3p mature miRNA
• Sequence: 49 - AAACAUUCGCGGUGCACUUCUUU - 71
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125