Stem-loop bta-mir-135b

Accession

MI0009738

Description

Bos taurus bta-mir-135b precursor miRNA

Literature search

65 open access papers mention bta-mir-135b
(274 sentences)

Sequence

3815 reads, 15.0 reads per million, 125 experiments

cucugcuguggccUAUGGCUUUUCAUUCCUAUGUGAuuacuguuccaaacucAUGUAGGGCUAAAAGCCAUGGGcuacagugaggggcgcgcgcc
(((.(((((((((((((((((((...((((((((((..............))))))))))..)))))))))))))))))))))).(((....)))

Structure

-----------   u                   CAU          uuacug 
           cuc gcuguggccUAUGGCUUUU   UCCUAUGUGA      u
           ||| |||||||||||||||||||   ||||||||||       
           gag ugacaucGGGUACCGAAAA   GGGAUGUAcu      u
ccgcgcgcggg   -                   -UC          caaacc 

Annotation confidence High

Genome context

16: 3197434-3197528 [-]

Mature bta-miR-135b-5p

• Accession: MIMAT0009229
• Description: Bos taurus bta-miR-135b-5p mature miRNA
• Sequence: 14 - UAUGGCUUUUCAUUCCUAUGUGA - 36
• Evidence: not_experimental

Mature bta-miR-135b-3p

• Accession: MIMAT0050816
• Description: Bos taurus bta-miR-135b-3p mature miRNA
• Sequence: 53 - AUGUAGGGCUAAAAGCCAUGGG - 74
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125